PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022265P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Dof
Protein Properties Length: 248aa    MW: 27587.5 Da    PI: 9.1578
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022265P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.72.6e-382585262
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                    ++++l+cprC+s+ntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvP+Gg++rkn+++ 
  MELO3C022265P1 25 PKEQLNCPRCKSNNTKFCYYNNYSLNQPRYFCKSCRRYWTEGGSLRNVPIGGASRKNRSKA 85
                    67899****************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027012.3E-322783IPR003851Zinc finger, Dof-type
ProDomPD0074787.0E-232782IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.5092983IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103167IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEEKNPNYPC KLEMKMTKAT TTKAPKEQLN CPRCKSNNTK FCYYNNYSLN QPRYFCKSCR  60
RYWTEGGSLR NVPIGGASRK NRSKASSSTT TSTSSSSDYF CSNNNKNKKL PNYPSSSQIS  120
TQIPVGLRDL NLADHDHLPK VENVNNYNNF AFGFRGLSSF IPNLMPDSNN INNNGNLGIN  180
SSHYSQYSSS GFSLGDHVDE FKPSFGINSV DRRNLLLPFQ ELNQQSAAPN EGDDHQNWSG  240
MLGGGSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819250.0LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459765.10.0PREDICTED: dof zinc finger protein DOF3.7
RefseqXP_008459766.10.0PREDICTED: dof zinc finger protein DOF3.7
RefseqXP_008459767.10.0PREDICTED: dof zinc finger protein DOF3.7
TrEMBLE5GCN00.0E5GCN0_CUCME; F-box family protein
STRINGPOPTR_0002s17490.13e-45(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2454833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.49e-32Dof family protein